Publications

  1. Microbiota responses to different prebiotics are conserved within individuals and associated with habitual fiber intake. Holmes ZC, Villa MM, Durand HK, Jiang S, Dallow EP, Petrone BL, Silverman JD, Lin PW, David LA. bioRxiv. (2021) https://doi.org/10.1101/2021.06.26.450023
  2. Ecological memory of prior nutrient exposure in the human gut microbiome. Letourneau J, Holmes ZC, Dallow EP, Durand HK, Jiang S, Gupta S, Mincey AC, Muehlbauer MJ, David LA. bioRxiv. (2021) https://doi.org/10.1101/2021.06.21.448853
  3. Genotypic and phenotypic diversity among human isolates of Akkermansia muciniphila. Becken B, Davey L, Middleton D, Mueller KD, Sharma A, Holmes ZC, Dallow EP, Remick B, Barton GM, David LA, McCann JR, Armstrong SC, Malkus P, Valdivia RH. mBio. (2021) https://doi.org/10.1128/mBio.00478-21
  4. Short-chain fatty acid production by gut microbiota from children with obesity differs according prebiotic choice and bacterial community composition. Holmes ZC, Silverman JD, Dressman HK, Zhengzheng W, Dallow EP, Armstrong SC, Seed PC, Rawls JF, David LA. mBio. (2020) https://doi.org/10.1128/mBio.00914-20
  5. Conserved anti-inflammatory effects and sensing of butyrate in zebrafish. Cholan PM, Han A, Woodie BR, Kurz ARM, Britton WJ, Ye L, Holmes ZC, McCann JR, David LA, Rawls JF, Oehlers SH. bioRxiv. (2020) https://doi.org/10.1101/2020.05.13.069997
  6. Use of the Ion Torrent PGM for Determining the Genomic Sequences of Francisella and Coxiella-Like Endosymbionts and Rickettsia Directly from Hard Ticks. Dasch GA, Ramaiah A, Holmes ZC, Zambrano ML, Shirey TB. In: Skvarla M, Ochoa R, Verle Rodrigues J, Hutcheson H (eds) Contemporary Acarology, Springer, Cham. (2019) https://doi.org/10.1007/978-3-030-17265-7_1
  7. Bayesian Multinomial Logistic Normal Models through Marginally Latent Matrix-T Processes. Silverman JD, Roche K, Holmes ZC, David LA, Mukherjee S. arXiv. (2019)
  8. Stronger positive association between an invasive crab and a native intertidal ecosystem engineer with increasing wave exposure. Wright JT, Holmes ZC, Byers JE. Marine Environmental Research. (2018) https://doi.org/10.1016/j.marenvres.2018.09.025
  9. Contrasting complexity of adjacent habitats influences the strength of cascading predatory effects. Byers JE, Holmes ZC, Malek JC. Oecologia. (2017) https://doi.org/10.1007/s00442-017-3928-y
  10. Consistency of trematode infection prevalence in host populations across large spatial and temporal scales. Byers, JE, Holmes ZC, Blakeslee AMH. Ecology. (2016)  https://doi.org/10.1002/ecy.1440
  11. Toxoplasma gondii Toc75 functions in import of stromal but not peripheral apicoplast proteins. Sheiner L, Fellows JD, Ovciarikova J, Brooks CF, Agrawal S, Holmes ZC, Bietz I, Flinner N, Heiny S, Mirus O, Przyborski JM, Striepen B. Traffic. (2015) https://doi.org/10.1111/tra.12333